PoplarV1, Main, Exploration, bibRecord, 001533

Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.

Identifieur interne : 001533 ( Main/Exploration ); précédent : 001532; suivant : 001534

Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.

Auteurs : Longxin Wang [République populaire de Chine] ; Bowen Wang [République populaire de Chine] ; Qingzhang Du [République populaire de Chine] ; Jinhui Chen [République populaire de Chine] ; Jiaxing Tian [République populaire de Chine] ; Xiaohui Yang [République populaire de Chine] ; Deqiang Zhang [République populaire de Chine]

Source :

Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2017.

RBID : pubmed:27722913

Descripteurs français

KwdFr :
- Allèles (MeSH), Arbres (composition chimique), Arbres (croissance et développement), Arbres (génétique), Arbres (physiologie), Bois (composition chimique), Bois (croissance et développement), Bois (génétique), Bois (physiologie), Clonage moléculaire (MeSH), Complexe protéique du photosystème II (génétique), Déséquilibre de liaison (MeSH), Expression des gènes (MeSH), Haplotypes (MeSH), Photosynthèse (MeSH), Polymorphisme de nucléotide simple (MeSH), Populus (composition chimique), Populus (croissance et développement), Populus (génétique), Populus (physiologie).
MESH :
- composition chimique : Arbres, Bois, Populus.
- croissance et développement : Arbres, Bois, Populus.
- génétique : Arbres, Bois, Complexe protéique du photosystème II, Populus.
- physiologie : Arbres, Bois, Populus.
- Allèles, Clonage moléculaire, Déséquilibre de liaison, Expression des gènes, Haplotypes, Photosynthèse, Polymorphisme de nucléotide simple.

English descriptors

KwdEn :
- Alleles (MeSH), Cloning, Molecular (MeSH), Gene Expression (MeSH), Haplotypes (MeSH), Linkage Disequilibrium (MeSH), Photosynthesis (MeSH), Photosystem II Protein Complex (genetics), Polymorphism, Single Nucleotide (MeSH), Populus (chemistry), Populus (genetics), Populus (growth & development), Populus (physiology), Trees (chemistry), Trees (genetics), Trees (growth & development), Trees (physiology), Wood (chemistry), Wood (genetics), Wood (growth & development), Wood (physiology).
MESH :
- chemical , genetics : Photosystem II Protein Complex.
- chemistry : Populus, Trees, Wood.
- genetics : Populus, Trees, Wood.
- growth & development : Populus, Trees, Wood.
- physiology : Populus, Trees, Wood.
- Alleles, Cloning, Molecular, Gene Expression, Haplotypes, Linkage Disequilibrium, Photosynthesis, Polymorphism, Single Nucleotide.

Abstract

Photosynthesis is one of the most important reactions on earth. PsbW, a nuclear-encoded subunit of photosystem II (PSII), stabilizes PSII structure and plays an important role in photosynthesis. Here, we used candidate gene-based linkage disequilibrium (LD) mapping to detect significant associations between allelic variations of PtoPsbW and traits related to photosynthesis, growth, and wood properties in Populus tomentosa. PtoPsbW showed the highest expression in leaves and it increased during the development of these leaves, suggesting that PtoPsbW may play an important role in plant growth and development. Analysis of nucleotide diversity and LD revealed that PtoPsbW has low single-nucleotide polymorphism (SNP) diversity (π _tot = 0.0048 and θ _w = 0.0050) and relatively low average value of LD (0.1500), indicating that PtoPsbW is conserved due to its indispensable function. Using single-SNP associations in an association population of 435 individuals, we identified five significant associations at the threshold of P ≤ 0.05, explaining 3.28-15.98 % of the phenotypic variation. Haplotype-based association analyses indicated that 13 haplotypes (P ≤ 0.05) from six blocks were associated with photosynthesis, growth, and wood properties. Our work shows that identifying allelic variation and LD can help to decipher the genetic basis of photosynthesis and could potentially be applied for molecular marker-assisted selection in Populus.

DOI: 10.1007/s00438-016-1257-1
PubMed: 27722913

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001603
to stream Main, to step Curation: 001603

Le document en format XML

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<wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083</wicri:regionArea>
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<author><name sortKey="Yang, Xiaohui" sort="Yang, Xiaohui" uniqKey="Yang X" first="Xiaohui" last="Yang">Xiaohui Yang</name>
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<term>Cloning, Molecular (MeSH)</term>
<term>Gene Expression (MeSH)</term>
<term>Haplotypes (MeSH)</term>
<term>Linkage Disequilibrium (MeSH)</term>
<term>Photosynthesis (MeSH)</term>
<term>Photosystem II Protein Complex (genetics)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Populus (chemistry)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>Populus (physiology)</term>
<term>Trees (chemistry)</term>
<term>Trees (genetics)</term>
<term>Trees (growth & development)</term>
<term>Trees (physiology)</term>
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<term>Wood (genetics)</term>
<term>Wood (growth & development)</term>
<term>Wood (physiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Allèles (MeSH)</term>
<term>Arbres (composition chimique)</term>
<term>Arbres (croissance et développement)</term>
<term>Arbres (génétique)</term>
<term>Arbres (physiologie)</term>
<term>Bois (composition chimique)</term>
<term>Bois (croissance et développement)</term>
<term>Bois (génétique)</term>
<term>Bois (physiologie)</term>
<term>Clonage moléculaire (MeSH)</term>
<term>Complexe protéique du photosystème II (génétique)</term>
<term>Déséquilibre de liaison (MeSH)</term>
<term>Expression des gènes (MeSH)</term>
<term>Haplotypes (MeSH)</term>
<term>Photosynthèse (MeSH)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Populus (composition chimique)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Populus (physiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Photosystem II Protein Complex</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Populus</term>
<term>Trees</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Arbres</term>
<term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Arbres</term>
<term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term>
<term>Trees</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term>
<term>Trees</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arbres</term>
<term>Bois</term>
<term>Complexe protéique du photosystème II</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Arbres</term>
<term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Populus</term>
<term>Trees</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Alleles</term>
<term>Cloning, Molecular</term>
<term>Gene Expression</term>
<term>Haplotypes</term>
<term>Linkage Disequilibrium</term>
<term>Photosynthesis</term>
<term>Polymorphism, Single Nucleotide</term>
</keywords>
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<term>Clonage moléculaire</term>
<term>Déséquilibre de liaison</term>
<term>Expression des gènes</term>
<term>Haplotypes</term>
<term>Photosynthèse</term>
<term>Polymorphisme de nucléotide simple</term>
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<front><div type="abstract" xml:lang="en">Photosynthesis is one of the most important reactions on earth. PsbW, a nuclear-encoded subunit of photosystem II (PSII), stabilizes PSII structure and plays an important role in photosynthesis. Here, we used candidate gene-based linkage disequilibrium (LD) mapping to detect significant associations between allelic variations of PtoPsbW and traits related to photosynthesis, growth, and wood properties in Populus tomentosa. PtoPsbW showed the highest expression in leaves and it increased during the development of these leaves, suggesting that PtoPsbW may play an important role in plant growth and development. Analysis of nucleotide diversity and LD revealed that PtoPsbW has low single-nucleotide polymorphism (SNP) diversity (π <sub>tot</sub>
 = 0.0048 and θ <sub>w</sub>
 = 0.0050) and relatively low average value of LD (0.1500), indicating that PtoPsbW is conserved due to its indispensable function. Using single-SNP associations in an association population of 435 individuals, we identified five significant associations at the threshold of P ≤ 0.05, explaining 3.28-15.98 % of the phenotypic variation. Haplotype-based association analyses indicated that 13 haplotypes (P ≤ 0.05) from six blocks were associated with photosynthesis, growth, and wood properties. Our work shows that identifying allelic variation and LD can help to decipher the genetic basis of photosynthesis and could potentially be applied for molecular marker-assisted selection in Populus.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27722913</PMID>
<DateCompleted><Year>2017</Year>
<Month>02</Month>
<Day>08</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1617-4623</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>292</Volume>
<Issue>1</Issue>
<PubDate><Year>2017</Year>
<Month>Feb</Month>
</PubDate>
</JournalIssue>
<Title>Molecular genetics and genomics : MGG</Title>
<ISOAbbreviation>Mol Genet Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.</ArticleTitle>
<Pagination><MedlinePgn>77-91</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00438-016-1257-1</ELocationID>
<Abstract><AbstractText>Photosynthesis is one of the most important reactions on earth. PsbW, a nuclear-encoded subunit of photosystem II (PSII), stabilizes PSII structure and plays an important role in photosynthesis. Here, we used candidate gene-based linkage disequilibrium (LD) mapping to detect significant associations between allelic variations of PtoPsbW and traits related to photosynthesis, growth, and wood properties in Populus tomentosa. PtoPsbW showed the highest expression in leaves and it increased during the development of these leaves, suggesting that PtoPsbW may play an important role in plant growth and development. Analysis of nucleotide diversity and LD revealed that PtoPsbW has low single-nucleotide polymorphism (SNP) diversity (π <sub>tot</sub>
 = 0.0048 and θ <sub>w</sub>
 = 0.0050) and relatively low average value of LD (0.1500), indicating that PtoPsbW is conserved due to its indispensable function. Using single-SNP associations in an association population of 435 individuals, we identified five significant associations at the threshold of P ≤ 0.05, explaining 3.28-15.98 % of the phenotypic variation. Haplotype-based association analyses indicated that 13 haplotypes (P ≤ 0.05) from six blocks were associated with photosynthesis, growth, and wood properties. Our work shows that identifying allelic variation and LD can help to decipher the genetic basis of photosynthesis and could potentially be applied for molecular marker-assisted selection in Populus.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Longxin</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Bowen</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Du</LastName>
<ForeName>Qingzhang</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Jinhui</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tian</LastName>
<ForeName>Jiaxing</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Xiaohui</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Deqiang</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China. DeqiangZhang@bjfu.edu.cn.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China. DeqiangZhang@bjfu.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2016</Year>
<Month>10</Month>
<Day>08</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Mol Genet Genomics</MedlineTA>
<NlmUniqueID>101093320</NlmUniqueID>
<ISSNLinking>1617-4623</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D045332">Photosystem II Protein Complex</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000483" MajorTopicYN="N">Alleles</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015870" MajorTopicYN="N">Gene Expression</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015810" MajorTopicYN="N">Linkage Disequilibrium</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010788" MajorTopicYN="N">Photosynthesis</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D045332" MajorTopicYN="N">Photosystem II Protein Complex</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020641" MajorTopicYN="Y">Polymorphism, Single Nucleotide</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Haplotype-based association analyses</Keyword>
<Keyword MajorTopicYN="N">Linkage disequilibrium</Keyword>
<Keyword MajorTopicYN="N">Photosynthesis</Keyword>
<Keyword MajorTopicYN="N">Photosystem</Keyword>
<Keyword MajorTopicYN="N">Populus tomentosa</Keyword>
<Keyword MajorTopicYN="N">PsbW protein</Keyword>
<Keyword MajorTopicYN="N">Single-nucleotide polymorphisms</Keyword>
</KeywordList>
</MedlineCitation>
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<affiliations><list><country><li>République populaire de Chine</li>
</country>
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<tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Longxin" sort="Wang, Longxin" uniqKey="Wang L" first="Longxin" last="Wang">Longxin Wang</name>
</noRegion>
<name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name>
<name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name>
<name sortKey="Du, Qingzhang" sort="Du, Qingzhang" uniqKey="Du Q" first="Qingzhang" last="Du">Qingzhang Du</name>
<name sortKey="Du, Qingzhang" sort="Du, Qingzhang" uniqKey="Du Q" first="Qingzhang" last="Du">Qingzhang Du</name>
<name sortKey="Tian, Jiaxing" sort="Tian, Jiaxing" uniqKey="Tian J" first="Jiaxing" last="Tian">Jiaxing Tian</name>
<name sortKey="Tian, Jiaxing" sort="Tian, Jiaxing" uniqKey="Tian J" first="Jiaxing" last="Tian">Jiaxing Tian</name>
<name sortKey="Wang, Bowen" sort="Wang, Bowen" uniqKey="Wang B" first="Bowen" last="Wang">Bowen Wang</name>
<name sortKey="Wang, Bowen" sort="Wang, Bowen" uniqKey="Wang B" first="Bowen" last="Wang">Bowen Wang</name>
<name sortKey="Wang, Longxin" sort="Wang, Longxin" uniqKey="Wang L" first="Longxin" last="Wang">Longxin Wang</name>
<name sortKey="Yang, Xiaohui" sort="Yang, Xiaohui" uniqKey="Yang X" first="Xiaohui" last="Yang">Xiaohui Yang</name>
<name sortKey="Yang, Xiaohui" sort="Yang, Xiaohui" uniqKey="Yang X" first="Xiaohui" last="Yang">Xiaohui Yang</name>
<name sortKey="Zhang, Deqiang" sort="Zhang, Deqiang" uniqKey="Zhang D" first="Deqiang" last="Zhang">Deqiang Zhang</name>
<name sortKey="Zhang, Deqiang" sort="Zhang, Deqiang" uniqKey="Zhang D" first="Deqiang" last="Zhang">Deqiang Zhang</name>
</country>
</tree>
</affiliations>
</record>

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{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:27722913
   |texte=   Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.
}}

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Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.

Allelic variation in PtoPsbW associated with photosynthesis, growth, and wood properties in Populus tomentosa.

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